SE4BIA - Search Engine for BioImage Analysis

Searchable index of image analysis tools.

Script Submission


Input LasX isolated tiff files, search for region/positions, stages and create hyperstack for each one, (xyzct). Save as tiff.

Get Parasite Position from ToAst

Reads logfile from ToAst (imageJ plugin) output and extracts all the lines until line = "Overall" and saves the tracking number, slice, X and Y position

Randomize Labels

If one labeled image has too many labels, "glasbey on dark" will not properly (visually) separate neighbours. This macro randomizes labels so two neighbours have little chance of having close values.