Radially_spatial_cell_measurements
Calculate intensity around border cell band(s)
Download README Download Script Download DataSetDetailed explanation
Input stack files with CY3 in the first channel (result from macro FromInCellToHyperstack) and the corresponding cell contours, nucleus contour and endossomes contours (result from Cellprofiler). The idea is to create 2 bands from the original contour with "band_with" specified by the user. Measure area and intensity inside each band, for each cell (over the endossomes region) and save it as an excel file.
Authors
Mafalda Sousa - IBMC - Instituto de Biologia Molecular e Celular,i3S - Instituto de Investigação e Inovação em Saúde
keywords
imagej; fiji; cellprofiler
Requirements
ImageJ; IJPB-plugin (https://github.com/ijpb/MorphoLibJ)