Name:
Radially_spatial_cell_measurements

Version:
v0.2; November 2019

Type:
Script/Macro

Keywords:
imagej; fiji; cellprofiler

Requirements:
ImageJ; IJPB-plugin (https://github.com/ijpb/MorphoLibJ) 

Brief Description:
Calculate intensity around border cell band(s)

Detailed Explanation:
Input stack files with CY3 in the first channel (result from macro FromInCellToHyperstack) and the corresponding cell contours, nucleus contour and endossomes contours (result from Cellprofiler). The idea is to create 2 bands from the original contour with "band_with" specified by the user. Measure area and intensity inside each band, for each cell (over the endossomes region) and save it as an excel file. 

DataSet Description:


External Location:
https://github.com/mafsousa/simpleImageJmacros/blob/master/Radially_spatial_cell_measurements.ijm

Link To Publication:


Authors:
Mafalda Sousa - IBMC - Instituto de Biologia Molecular e Celular,i3S - Instituto de Investigação e Inovação em Saúde