From In Cell To Hyperstack
Create a hyperstack for each field within each well for InCell High-Throughput system files.
Download READMEDetailed explanation
Input InCell isolated tiff files and search for filenames with specific wells (lines, columns) and fields in the folder. Create an hyperstack for each field (xyzct) and save it as tiff file. Main steps: Run as macro script; define input folder and (empty) output folder; Insert number of channels, fields, frames and slices. Output: hyperstack (3D/4D/5D) tiff file for each field
Authors
Mafalda Sousa - IBMC - Instituto de Biologia Molecular e Celular,i3S - Instituto de Investigação e Inovação em Saúde
keywords
InCell,Hyperstack,Fiji,ImageJ
Requirements
ImageJ v1.52p